IL_8I9Y_069

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8I9Y|1|C1|C|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_069 not in the Motif Atlas

Geometric match to IL_5TBW_069

Geometric discrepancy: 0.1388

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8I9Y|1|C1|C|1648
8I9Y|1|C1|C|1649
*
8I9Y|1|C1|G|1757
8I9Y|1|C1|C|1758
8I9Y|1|C1|G|1759

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CY

Putative NOC2 family protein

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein