IL_8I9Y_083

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_083 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.2464

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8I9Y|1|C1|G|2428
8I9Y|1|C1|G|2429
8I9Y|1|C1|A|2430
8I9Y|1|C1|G|2431
*
8I9Y|1|C1|C|2438
8I9Y|1|C1|G|2439
8I9Y|1|C1|C|2440
8I9Y|1|C1|C|2441
8I9Y|1|C1|A|2442
8I9Y|1|C1|G|2443
8I9Y|1|C1|U|2444
8I9Y|1|C1|G|2445
8I9Y|1|C1|A|2446
8I9Y|1|C1|A|2447
8I9Y|1|C1|A|2448
8I9Y|1|C1|U|2449
8I9Y|1|C1|A|2450
8I9Y|1|C1|C|2451

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein

Chain Lq

Ribosomal protein