IL_8I9Y_090

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8I9Y|1|C1|A|3099, 8I9Y|1|C1|C|3100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_090 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0896

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8I9Y|1|C1|C|2961
8I9Y|1|C1|A|2962
8I9Y|1|C1|A|2963
8I9Y|1|C1|U|2964
*
8I9Y|1|C1|A|3096
8I9Y|1|C1|G|3097
8I9Y|1|C1|A|3098
8I9Y|1|C1|A|3099
8I9Y|1|C1|C|3100
8I9Y|1|C1|G|3101

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein