IL_8I9Y_096
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|3087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Y_096 not in the Motif Atlas
- Homologous match to IL_8C3A_129
- Geometric discrepancy: 0.1157
- The information below is about IL_8C3A_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8I9Y|1|C1|A|3060
8I9Y|1|C1|U|3061
8I9Y|1|C1|A|3062
8I9Y|1|C1|A|3063
8I9Y|1|C1|U|3064
*
8I9Y|1|C1|A|3084
8I9Y|1|C1|G|3085
8I9Y|1|C1|A|3086
8I9Y|1|C1|A|3087
8I9Y|1|C1|U|3088
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
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