IL_8I9Y_109

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Y_109 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.3962

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8I9Y|1|C1|A|3282
8I9Y|1|C1|G|3283
8I9Y|1|C1|A|3284
8I9Y|1|C1|G|3285
*
8I9Y|1|C1|C|3300
8I9Y|1|C1|G|3301
8I9Y|1|C1|A|3302
8I9Y|1|C1|U|3303

Current chains

Chain C1

RNA (3341-MER)

Nearby chains