IL_8I9Z_034

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_034 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.2119

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8I9Z|1|C1|U|815
8I9Z|1|C1|G|816
8I9Z|1|C1|A|817
8I9Z|1|C1|A|818
8I9Z|1|C1|G|819
*
8I9Z|1|C1|U|836
8I9Z|1|C1|G|837
8I9Z|1|C1|G|838
8I9Z|1|C1|A|839
8I9Z|1|C1|G|840

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1

Chain CY

Putative NOC2 family protein

Chain LR

Ribosomal protein L19