IL_8I9Z_047
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCCGGAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_047 not in the Motif Atlas
- Geometric match to IL_4V9F_038
- Geometric discrepancy: 0.1501
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8I9Z|1|C1|U|1155
8I9Z|1|C1|G|1156
8I9Z|1|C1|C|1157
8I9Z|1|C1|C|1158
8I9Z|1|C1|G|1159
8I9Z|1|C1|G|1160
8I9Z|1|C1|A|1161
8I9Z|1|C1|G|1162
*
8I9Z|1|C1|C|1307
8I9Z|1|C1|A|1308
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LS
- 60S ribosomal protein L20
- Chain Lf
- 60S ribosomal protein l33-like protein
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