IL_8I9Z_057
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8I9Z|1|C1|C|1373
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I9Z_057 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0982
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8I9Z|1|C1|U|1370
8I9Z|1|C1|G|1371
8I9Z|1|C1|A|1372
8I9Z|1|C1|C|1373
8I9Z|1|C1|G|1374
8I9Z|1|C1|A|1375
8I9Z|1|C1|A|1376
8I9Z|1|C1|G|1377
*
8I9Z|1|C1|U|1397
8I9Z|1|C1|C|1398
8I9Z|1|C1|G|1399
8I9Z|1|C1|A|1400
8I9Z|1|C1|A|1401
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CV
- Putative 60S ribosomal protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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