IL_8I9Z_082

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUG*CCGGC

Length

9 nucleotides

Bulged bases

8I9Z|1|C1|G|2043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_082 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.3779

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8I9Z|1|C1|G|1937
8I9Z|1|C1|U|1938
8I9Z|1|C1|U|1939
8I9Z|1|C1|G|1940
*
8I9Z|1|C1|C|2041
8I9Z|1|C1|C|2042
8I9Z|1|C1|G|2043
8I9Z|1|C1|G|2044
8I9Z|1|C1|C|2045

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CD

Ribosome biogenesis protein YTM1