IL_8I9Z_084

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9Z_084 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2643

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8I9Z|1|C1|U|1944
8I9Z|1|C1|U|1945
8I9Z|1|C1|U|1946
8I9Z|1|C1|G|1947
*
8I9Z|1|C1|C|2022
8I9Z|1|C1|U|2023
8I9Z|1|C1|U|2024
8I9Z|1|C1|A|2025

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CD

Ribosome biogenesis protein YTM1