IL_8IA0_005
3D structure
- PDB id
- 8IA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IA0_005 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1603
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IA0|1|C1|C|82
8IA0|1|C1|C|83
8IA0|1|C1|U|84
8IA0|1|C1|A|85
8IA0|1|C1|G|86
8IA0|1|C1|U|87
8IA0|1|C1|A|88
8IA0|1|C1|A|89
*
8IA0|1|C1|U|97
8IA0|1|C1|G|98
8IA0|1|C1|A|99
8IA0|1|C1|A|100
8IA0|1|C1|G|101
8IA0|1|C1|C|102
8IA0|1|C1|G|103
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CA
- Brix domain-containing protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
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