IL_8IA0_128
3D structure
- PDB id
- 8IA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 8IA0|1|C1|G|3309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IA0_128 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.0901
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
8IA0|1|C1|U|3272
8IA0|1|C1|G|3273
8IA0|1|C1|U|3274
8IA0|1|C1|A|3275
8IA0|1|C1|A|3276
8IA0|1|C1|G|3277
*
8IA0|1|C1|C|3307
8IA0|1|C1|U|3308
8IA0|1|C1|G|3309
8IA0|1|C1|A|3310
8IA0|1|C1|G|3311
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain Ld
- Putative 60S ribosomal protein
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