IL_8IA0_145

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCCC*GGC

Length

8 nucleotides

Bulged bases

8IA0|1|C1|C|2730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IA0_145 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3214

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8IA0|1|C1|G|2728
8IA0|1|C1|U|2729
8IA0|1|C1|C|2730
8IA0|1|C1|C|2731
8IA0|1|C1|C|2732
*
8IA0|1|C1|G|2744
8IA0|1|C1|G|2745
8IA0|1|C1|C|2746

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein