IL_8IAZ_002

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGAG*CGAUGAAA

Length

13 nucleotides

Bulged bases

8IAZ|1|E|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_002 not in the Motif Atlas

Geometric match to IL_5FJ4_002

Geometric discrepancy: 0.1412

The information below is about IL_5FJ4_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8IAZ|1|E|U|55
8IAZ|1|E|G|56
8IAZ|1|E|G|57
8IAZ|1|E|A|58
8IAZ|1|E|G|59
*
8IAZ|1|E|C|110
8IAZ|1|E|G|111
8IAZ|1|E|A|112
8IAZ|1|E|U|113
8IAZ|1|E|G|114
8IAZ|1|E|A|115
8IAZ|1|E|A|116
8IAZ|1|E|A|117

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase