IL_8IAZ_006

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAU*AAU

Length

7 nucleotides

Bulged bases

8IAZ|1|E|A|83

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IAZ_006 not in the Motif Atlas

Geometric match to IL_1L9A_003

Geometric discrepancy: 0.266

The information below is about IL_1L9A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8IAZ|1|E|A|81
8IAZ|1|E|U|82
8IAZ|1|E|A|83
8IAZ|1|E|U|84
*
8IAZ|1|E|A|95
8IAZ|1|E|A|96
8IAZ|1|E|U|97

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase