IL_8IBY_005

3D structure

PDB id

8IBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R2 with 5'ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AC*GUGGGGCCUUGCGAU

Length

17 nucleotides

Bulged bases

8IBY|1|E|C|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IBY_005 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.127

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8IBY|1|E|A|92
8IBY|1|E|C|93
*
8IBY|1|E|G|100
8IBY|1|E|U|101
8IBY|1|E|G|102
8IBY|1|E|G|103
8IBY|1|E|G|104
8IBY|1|E|G|105
8IBY|1|E|C|106
8IBY|1|E|C|107
8IBY|1|E|U|108
8IBY|1|E|U|109
8IBY|1|E|G|110
8IBY|1|E|C|111
8IBY|1|E|G|112
8IBY|1|E|A|113
8IBY|1|E|U|114

Current chains

Chain E

5'ORF RNA

Nearby chains

Chain C

Reverse transcriptase-like protein