8IBY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8IBY_007 | 1/E/32:38 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_8IBY_002 | 1/E/65:72 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_8IBY_003 | 1/E/94:99 | No text annotation | geometric HL_5HR7_005 HL_50006.2 | |
| HL_8IBY_004 | 1/E/142:146 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8IBY_005 | 1/E/177:184 | Externally structured | geometric HL_8C3A_022 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8IBY_001 | GNRA with extra cWW | ||
| HL_8IBY_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8IBY_001 | 1/E/63:65, 1/E/72:74 | Isolated cWH basepair | geometric IL_4WF9_045 IL_10167.5 | |
| IL_8IBY_002 | 1/E/84:86, 1/E/120:121 | Single bulged A | geometric IL_8VTW_032 NA | |
| IL_8IBY_003 | 1/E/88:90, 1/E/117:118 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_8IBY_004 | 1/E/90:91, 1/E/115:117 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8IBY_005 | 1/E/92:93, 1/E/100:114 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_8IBY_007 | 1/E/170:172, 1/E/191:194 | Isolated non-canonical cWW pair | geometric IL_7ECO_006 IL_87907.2 | |
| IL_8IBY_009 | 1/E/175:176, 1/E/185:188 | Multiple bulged bases | geometric IL_6CZR_119 NA | |
| IL_8IBY_010 | 1/E/257:259, 1/E/313:314 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8IBY_006 | No text annotation | ||
| IL_8IBY_008 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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