8IBY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8IBY_001 | GNRA with extra cWW | ||
| HL_8IBY_007 | No text annotation | ||
| HL_8IBY_002 | No text annotation | ||
| HL_8IBY_003 | No text annotation | ||
| HL_8IBY_004 | No text annotation | ||
| HL_8IBY_005 | Externally structured | ||
| HL_8IBY_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8IBY_002 | 1/E/84:86, 1/E/120:121 | Single bulged A | geometric IL_8VTW_032 NA | |
| IL_8IBY_003 | 1/E/88:90, 1/E/117:118 | Single stack bend | geometric IL_7MLX_001 IL_15011.4 | |
| IL_8IBY_004 | 1/E/90:91, 1/E/115:117 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_8IBY_005 | 1/E/92:93, 1/E/100:114 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8IBY_001 | Isolated cWH basepair | ||
| IL_8IBY_006 | No text annotation | ||
| IL_8IBY_007 | Isolated non-canonical cWW pair | ||
| IL_8IBY_008 | Isolated non-canonical cWW pair | ||
| IL_8IBY_009 | Multiple bulged bases | ||
| IL_8IBY_010 | Single bulged U |
Valid loops
No loops found
Problematic loops
No problematic loops
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