IL_8IBY_007

3D structure

PDB id

8IBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R2 with 5'ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCU*AAAG

Length

7 nucleotides

Bulged bases

8IBY|1|E|A|192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IBY_007 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.3037

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8IBY|1|E|C|170
8IBY|1|E|C|171
8IBY|1|E|U|172
*
8IBY|1|E|A|191
8IBY|1|E|A|192
8IBY|1|E|A|193
8IBY|1|E|G|194

Current chains

Chain E

5'ORF RNA

Nearby chains