IL_8IBY_008

3D structure

PDB id

8IBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R2 with 5'ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IBY_008 not in the Motif Atlas

Geometric match to IL_7Y2B_003

Geometric discrepancy: 0.2768

The information below is about IL_7Y2B_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8IBY|1|E|U|172
8IBY|1|E|G|173
8IBY|1|E|U|174
*
8IBY|1|E|A|189
8IBY|1|E|U|190
8IBY|1|E|A|191

Current chains

Chain E

5'ORF RNA

Nearby chains

Chain C

Reverse transcriptase-like protein