IL_8IDT_012

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGUGG*CG

Length

8 nucleotides

Bulged bases

8IDT|1|2|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_012 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2416

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8IDT|1|2|U|184
8IDT|1|2|C|185
8IDT|1|2|G|186
8IDT|1|2|U|187
8IDT|1|2|G|188
8IDT|1|2|G|189
*
8IDT|1|2|C|252
8IDT|1|2|G|253

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13