IL_8IDT_080

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC

Length

28 nucleotides

Bulged bases

8IDT|1|2|C|1935, 8IDT|1|2|A|2041, 8IDT|1|2|U|2044, 8IDT|1|2|G|2049

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_080 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.2025

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8IDT|1|2|G|1933
8IDT|1|2|A|1934
8IDT|1|2|C|1935
8IDT|1|2|C|1936
8IDT|1|2|C|1937
8IDT|1|2|C|1938
8IDT|1|2|A|1939
8IDT|1|2|G|1940
8IDT|1|2|A|1941
8IDT|1|2|A|1942
8IDT|1|2|A|1943
8IDT|1|2|A|1944
*
8IDT|1|2|U|2038
8IDT|1|2|G|2039
8IDT|1|2|A|2040
8IDT|1|2|A|2041
8IDT|1|2|A|2042
8IDT|1|2|A|2043
8IDT|1|2|U|2044
8IDT|1|2|G|2045
8IDT|1|2|G|2046
8IDT|1|2|A|2047
8IDT|1|2|U|2048
8IDT|1|2|G|2049
8IDT|1|2|OMG|2050
8IDT|1|2|C|2051
8IDT|1|2|G|2052
8IDT|1|2|C|2053

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 5

5S ribosomal RNA; 5S rRNA

Chain B

60S ribosomal protein L3

Chain T

Leydig cell tumor 10 kDa protein homolog

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a