IL_8IDT_083

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_083 not in the Motif Atlas

Geometric match to IL_3SJ2_001

Geometric discrepancy: 0.1763

The information below is about IL_3SJ2_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IDT|1|2|C|1971
8IDT|1|2|G|1972
8IDT|1|2|G|1973
*
8IDT|1|2|C|1993
8IDT|1|2|C|1994
8IDT|1|2|G|1995

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain y

60S ribosomal protein L12