IL_8IDT_095

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_095 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.1718

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8IDT|1|2|A|2477
8IDT|1|2|C|2478
8IDT|1|2|G|2479
*
8IDT|1|2|C|2499
8IDT|1|2|U|2500

Current chains

Chain 2

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L23a