IL_8IDT_121

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_121 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.3909

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8IDT|1|2|G|3710
8IDT|1|2|A|3711
8IDT|1|2|A|3712
8IDT|1|2|U|3713
8IDT|1|2|G|3714
*
8IDT|1|2|C|3739
8IDT|1|2|G|3740
8IDT|1|2|C|3741

Current chains

Chain 2

28S rRNA

Nearby chains

Chain m

60S ribosomal protein L8