IL_8IDT_178

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUGU*GACCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDT_178 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3231

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8IDT|1|2|C|490
8IDT|1|2|G|491
8IDT|1|2|U|492
8IDT|1|2|G|493
8IDT|1|2|U|494
*
8IDT|1|2|G|659
8IDT|1|2|A|660
8IDT|1|2|C|661
8IDT|1|2|C|662
8IDT|1|2|G|663

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4