IL_8IDY_052

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_052 not in the Motif Atlas

Geometric match to IL_1M5K_001

Geometric discrepancy: 0.367

The information below is about IL_1M5K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IDY|1|2|G|1425
8IDY|1|2|G|1426
8IDY|1|2|A|1427
8IDY|1|2|U|1428
8IDY|1|2|C|1429
*
8IDY|1|2|G|1455
8IDY|1|2|B8Q|1456
8IDY|1|2|G|1457
8IDY|1|2|C|1458
8IDY|1|2|A|1459
8IDY|1|2|C|1460

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain Z

60S ribosomal protein L18