IL_8IDY_077

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC

Length

28 nucleotides

Bulged bases

8IDY|1|2|C|1935, 8IDY|1|2|A|2041, 8IDY|1|2|U|2044, 8IDY|1|2|G|2049

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IDY_077 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.2064

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8IDY|1|2|G|1933
8IDY|1|2|A|1934
8IDY|1|2|C|1935
8IDY|1|2|C|1936
8IDY|1|2|C|1937
8IDY|1|2|C|1938
8IDY|1|2|A|1939
8IDY|1|2|G|1940
8IDY|1|2|A|1941
8IDY|1|2|A|1942
8IDY|1|2|A|1943
8IDY|1|2|A|1944
*
8IDY|1|2|U|2038
8IDY|1|2|G|2039
8IDY|1|2|A|2040
8IDY|1|2|A|2041
8IDY|1|2|A|2042
8IDY|1|2|A|2043
8IDY|1|2|U|2044
8IDY|1|2|G|2045
8IDY|1|2|G|2046
8IDY|1|2|A|2047
8IDY|1|2|U|2048
8IDY|1|2|G|2049
8IDY|1|2|OMG|2050
8IDY|1|2|C|2051
8IDY|1|2|G|2052
8IDY|1|2|C|2053

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 5

5S ribosomal RNA; 5S rRNA

Chain B

60S ribosomal protein L3

Chain T

Leydig cell tumor 10 kDa protein homolog

Chain V

60S ribosomal protein L13a

Chain v

Ribosome biogenesis protein NSA2 homolog