IL_8IDY_119
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCA(A2M)AGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IDY_119 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1805
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IDY|1|2|U|3715
8IDY|1|2|C|3716
8IDY|1|2|A|3717
8IDY|1|2|A2M|3718
8IDY|1|2|A|3719
8IDY|1|2|G|3720
8IDY|1|2|U|3721
*
8IDY|1|2|A|3732
8IDY|1|2|A|3733
8IDY|1|2|U|3734
8IDY|1|2|G|3735
8IDY|1|2|A|3736
8IDY|1|2|A|3737
8IDY|1|2|G|3738
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L36
- Chain W
- 60S ribosomal protein L36a
- Chain m
- 60S ribosomal protein L8
- Chain u
- Protein SDA1 homolog
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