IL_8IDY_130
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IDY_130 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.2357
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8IDY|1|2|C|4243
8IDY|1|2|A|4244
8IDY|1|2|G|4245
*
8IDY|1|2|C|4263
8IDY|1|2|G|4264
8IDY|1|2|U|4265
8IDY|1|2|G|4266
8IDY|1|2|G|4267
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 60S ribosomal protein L11
- Chain c
- 60S ribosomal protein L21
- Chain r
- 60S ribosomal protein L5
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