IL_8IE3_077
3D structure
- PDB id
- 8IE3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 8IE3|1|2|C|1935, 8IE3|1|2|A|2041, 8IE3|1|2|U|2044, 8IE3|1|2|G|2049
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IE3_077 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2587
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IE3|1|2|G|1933
8IE3|1|2|A|1934
8IE3|1|2|C|1935
8IE3|1|2|C|1936
8IE3|1|2|C|1937
8IE3|1|2|C|1938
8IE3|1|2|A|1939
8IE3|1|2|G|1940
8IE3|1|2|A|1941
8IE3|1|2|A|1942
8IE3|1|2|A|1943
8IE3|1|2|A|1944
*
8IE3|1|2|U|2038
8IE3|1|2|G|2039
8IE3|1|2|A|2040
8IE3|1|2|A|2041
8IE3|1|2|A|2042
8IE3|1|2|A|2043
8IE3|1|2|U|2044
8IE3|1|2|G|2045
8IE3|1|2|G|2046
8IE3|1|2|A|2047
8IE3|1|2|U|2048
8IE3|1|2|G|2049
8IE3|1|2|OMG|2050
8IE3|1|2|C|2051
8IE3|1|2|G|2052
8IE3|1|2|C|2053
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain R
- Ribosome biogenesis protein NSA2 homolog
- Chain V
- 60S ribosomal protein L13a
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