IL_8IE3_081

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8IE3|1|2|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IE3_081 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.2835

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8IE3|1|2|G|1973
8IE3|1|2|U|1974
8IE3|1|2|G|1975
8IE3|1|2|G|1976
8IE3|1|2|C|1977
*
8IE3|1|2|G|1989
8IE3|1|2|A|1990
8IE3|1|2|A|1991
8IE3|1|2|U|1992
8IE3|1|2|C|1993

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog