IL_8IE3_189

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IE3_189 not in the Motif Atlas

Homologous match to IL_8CRE_093

Geometric discrepancy: 0.2965

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8IE3|1|2|U|3715
8IE3|1|2|C|3716
8IE3|1|2|A|3717
8IE3|1|2|A2M|3718
8IE3|1|2|A|3719
8IE3|1|2|G|3720
8IE3|1|2|U|3721
*
8IE3|1|2|A|3732
8IE3|1|2|A|3733
8IE3|1|2|U|3734
8IE3|1|2|G|3735
8IE3|1|2|A|3736
8IE3|1|2|A|3737
8IE3|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain m

60S ribosomal protein L8