IL_8IFB_014

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8IFB|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFB_014 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1183

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8IFB|1|A|G|147
8IFB|1|A|G|148
8IFB|1|A|A|149
8IFB|1|A|U|150
8IFB|1|A|A|151
8IFB|1|A|A|152
8IFB|1|A|C|153
*
8IFB|1|A|G|168
8IFB|1|A|C|169
8IFB|1|A|U|170
8IFB|1|A|A|171
8IFB|1|A|A|172
8IFB|1|A|U|173
8IFB|1|A|A|174
8IFB|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20