IL_8IFB_026
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8IFB|1|A|A|532, 8IFB|1|A|U|534, 8IFB|1|A|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFB_026 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1034
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IFB|1|A|G|515
8IFB|1|A|PSU|516
8IFB|1|A|G|517
8IFB|1|A|C|518
8IFB|1|A|C|519
8IFB|1|A|A|520
8IFB|1|A|G|521
*
8IFB|1|A|C|528
8IFB|1|A|G|529
8IFB|1|A|G|530
8IFB|1|A|U|531
8IFB|1|A|A|532
8IFB|1|A|A|533
8IFB|1|A|U|534
8IFB|1|A|A|535
8IFB|1|A|C|536
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 7
- mRNA
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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