IL_8IFB_185

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFB_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IFB|1|a|U|1851
8IFB|1|a|U|1852
8IFB|1|a|A|1853
8IFB|1|a|A|1854
8IFB|1|a|U|1855
8IFB|1|a|U|1856
8IFB|1|a|G|1857
8IFB|1|a|A|1858
8IFB|1|a|U|1859
8IFB|1|a|G|1860
*
8IFB|1|a|U|1882
8IFB|1|a|U|1883
8IFB|1|a|G|1884
8IFB|1|a|A|1885
8IFB|1|a|U|1886
8IFB|1|a|C|1887
8IFB|1|a|G|1888
8IFB|1|a|A|1889
8IFB|1|a|A|1890
8IFB|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains