3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8IFC|1|A|A|532, 8IFC|1|A|U|534, 8IFC|1|A|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IFC_029 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1123
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8IFC|1|A|G|515
8IFC|1|A|PSU|516
8IFC|1|A|G|517
8IFC|1|A|C|518
8IFC|1|A|C|519
8IFC|1|A|A|520
8IFC|1|A|G|521
*
8IFC|1|A|C|528
8IFC|1|A|G|529
8IFC|1|A|G|530
8IFC|1|A|U|531
8IFC|1|A|A|532
8IFC|1|A|A|533
8IFC|1|A|U|534
8IFC|1|A|A|535
8IFC|1|A|C|536

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 7
mRNA
Chain C
30S ribosomal protein S3
Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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