IL_8IFC_065

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_065 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8IFC|1|A|G|1401
8IFC|1|A|4OC|1402
8IFC|1|A|C|1403
8IFC|1|A|C|1404
*
8IFC|1|A|G|1497
8IFC|1|A|UR3|1498
8IFC|1|A|A|1499
8IFC|1|A|A|1500
8IFC|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain 7

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA