IL_8IFC_087

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8IFC|1|a|G|801, 8IFC|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_087 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0602

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8IFC|1|a|G|674
8IFC|1|a|A|675
8IFC|1|a|A|676
8IFC|1|a|A|677
8IFC|1|a|C|678
*
8IFC|1|a|G|799
8IFC|1|a|A|800
8IFC|1|a|G|801
8IFC|1|a|A|802
8IFC|1|a|U|803
8IFC|1|a|A|804
8IFC|1|a|G|805
8IFC|1|a|C|806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15