IL_8IFC_104

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_104 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0624

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8IFC|1|a|U|1004
8IFC|1|a|C|1005
8IFC|1|a|C|1006
8IFC|1|a|C|1007
8IFC|1|a|A|1008
8IFC|1|a|A|1009
8IFC|1|a|A|1010
8IFC|1|a|G|1011
*
8IFC|1|a|C|1150
8IFC|1|a|A|1151

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20