3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AAU*AGGUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IFC_152 not in the Motif Atlas
Homologous match to IL_5J7L_332
Geometric discrepancy: 0.1205
The information below is about IL_5J7L_332
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61476.2
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
7

Unit IDs

8IFC|1|a|A|2297
8IFC|1|a|A|2298
8IFC|1|a|U|2299
*
8IFC|1|a|A|2317
8IFC|1|a|G|2318
8IFC|1|a|G|2319
8IFC|1|a|U|2320
8IFC|1|a|U|2321

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain f
50S ribosomal protein L5

Coloring options:


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