IL_8IFC_185

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_185 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0461

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8IFC|1|a|G|1666
8IFC|1|a|G|1667
8IFC|1|a|A|1668
8IFC|1|a|A|1669
8IFC|1|a|C|1670
8IFC|1|a|U|1671
8IFC|1|a|A|1672
8IFC|1|a|G|1673
8IFC|1|a|G|1674
*
8IFC|1|a|C|1990
8IFC|1|a|U|1991
8IFC|1|a|G|1992
8IFC|1|a|U|1993
8IFC|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14