IL_8IFC_186

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IFC|1|a|U|1851
8IFC|1|a|U|1852
8IFC|1|a|A|1853
8IFC|1|a|A|1854
8IFC|1|a|U|1855
8IFC|1|a|U|1856
8IFC|1|a|G|1857
8IFC|1|a|A|1858
8IFC|1|a|U|1859
8IFC|1|a|G|1860
*
8IFC|1|a|U|1882
8IFC|1|a|U|1883
8IFC|1|a|G|1884
8IFC|1|a|A|1885
8IFC|1|a|U|1886
8IFC|1|a|C|1887
8IFC|1|a|G|1888
8IFC|1|a|A|1889
8IFC|1|a|A|1890
8IFC|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains