IL_8IFD_021

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_021 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1445

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8IFD|1|1A|G|462
8IFD|1|1A|A|463
8IFD|1|1A|G|464
*
8IFD|1|1A|C|691
8IFD|1|1A|A|692
8IFD|1|1A|C|693

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2k

60S ribosomal protein L28