IL_8IFD_022

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8IFD|1|1A|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|A|466
8IFD|1|1A|U|467
8IFD|1|1A|U|468
8IFD|1|1A|C|469
8IFD|1|1A|A|470
8IFD|1|1A|A|471
8IFD|1|1A|C|472
*
8IFD|1|1A|G|682
8IFD|1|1A|C|683
8IFD|1|1A|G|684
8IFD|1|1A|C|685
8IFD|1|1A|A|686
8IFD|1|1A|U|687
8IFD|1|1A|U|688
8IFD|1|1A|U|689

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2k

60S ribosomal protein L28