IL_8IFD_024

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8IFD|1|1A|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_024 not in the Motif Atlas

Geometric match to IL_5TBW_374

Geometric discrepancy: 0.3741

The information below is about IL_5TBW_374

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.2

Basepair signature

cWW-cWW-cWW-R

Number of instances in this motif group

8

Unit IDs

8IFD|1|1A|G|487
8IFD|1|1A|G|488
*
8IFD|1|1A|C|665
8IFD|1|1A|G|666
8IFD|1|1A|A|667
8IFD|1|1A|C|668
8IFD|1|1A|C|669

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2k

60S ribosomal protein L28