IL_8IFD_027
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGCCCGG*UCC
- Length
- 10 nucleotides
- Bulged bases
- 8IFD|1|1A|C|501, 8IFD|1|1A|C|502, 8IFD|1|1A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_027 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.3236
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8IFD|1|1A|G|499
8IFD|1|1A|G|500
8IFD|1|1A|C|501
8IFD|1|1A|C|502
8IFD|1|1A|C|503
8IFD|1|1A|G|504
8IFD|1|1A|G|505
*
8IFD|1|1A|U|653
8IFD|1|1A|C|654
8IFD|1|1A|C|655
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2K
- 60S ribosomal protein L18
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