IL_8IFD_060
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_060 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.1117
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8IFD|1|1A|C|1551
8IFD|1|1A|G|1552
8IFD|1|1A|A|1553
8IFD|1|1A|A|1554
8IFD|1|1A|G|1555
*
8IFD|1|1A|U|1572
8IFD|1|1A|G|1573
8IFD|1|1A|G|1574
8IFD|1|1A|A|1575
8IFD|1|1A|G|1576
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2L
- 60S ribosomal protein L19
- Chain 2j
- 60S ribosomal protein L37a
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