IL_8IFD_065
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CUG*CUAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_065 not in the Motif Atlas
- Homologous match to IL_8GLP_064
- Geometric discrepancy: 0.0507
- The information below is about IL_8GLP_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16315.2
- Basepair signature
- cWW-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IFD|1|1A|C|1686
8IFD|1|1A|U|1687
8IFD|1|1A|G|1688
*
8IFD|1|1A|C|1848
8IFD|1|1A|U|1849
8IFD|1|1A|A|1850
8IFD|1|1A|G|1851
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
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