IL_8IFD_082
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8IFD|1|1A|C|1935, 8IFD|1|1A|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_082 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1621
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IFD|1|1A|G|1933
8IFD|1|1A|A|1934
8IFD|1|1A|C|1935
8IFD|1|1A|C|1936
8IFD|1|1A|C|1937
8IFD|1|1A|C|1938
8IFD|1|1A|A|1939
8IFD|1|1A|G|1940
8IFD|1|1A|A|1941
8IFD|1|1A|A|1942
8IFD|1|1A|A|1943
8IFD|1|1A|A|1944
*
8IFD|1|1A|U|2038
8IFD|1|1A|G|2039
8IFD|1|1A|A|2040
8IFD|1|1A|A|2041
8IFD|1|1A|A|2042
8IFD|1|1A|A|2043
8IFD|1|1A|U|2044
8IFD|1|1A|G|2045
8IFD|1|1A|G|2046
8IFD|1|1A|A|2047
8IFD|1|1A|U|2048
8IFD|1|1A|G|2049
8IFD|1|1A|G|2050
8IFD|1|1A|C|2051
8IFD|1|1A|G|2052
8IFD|1|1A|C|2053
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1E
- 60S ribosomal protein L3
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2Z
- 60S ribosomal protein L35a
- Chain 2g
- Large ribosomal subunit protein eL40
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