IL_8IFD_108
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IFD|1|1A|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_108 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0803
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IFD|1|1A|C|2867
8IFD|1|1A|G|2868
8IFD|1|1A|U|2869
8IFD|1|1A|A|2870
8IFD|1|1A|A|2871
8IFD|1|1A|C|2872
*
8IFD|1|1A|G|2877
8IFD|1|1A|G|2878
8IFD|1|1A|A|2879
8IFD|1|1A|U|2880
8IFD|1|1A|A|2881
8IFD|1|1A|A|2882
8IFD|1|1A|G|2883
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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